| Rk | Renner | Ploeg | Stage name | Ranking name | Points | Koers |
| 1 | Alessandro Petacchi | ERW | final ranking | Final ranking | 120 | Volta ao Algarve |
| 2 | Rene Haselbacher | AFR | final ranking | Final ranking | 90 | Volta ao Algarve |
| 3 | Tomas Vaitkus | AFR | final ranking | Final ranking | 72 | Volta ao Algarve |
| 4 | Davide Rebellin | JOJ | final ranking | Final ranking | 66 | Volta ao Algarve |
| 5 | Philippe Gilbert | EUS | final ranking | Final ranking | 60 | Volta ao Algarve |
| 6 | Tiago Machado | DFC | final ranking | Final ranking | 54 | Volta ao Algarve |
| 7 | Geoffrey Lequatre | DUK | final ranking | Final ranking | 48 | Volta ao Algarve |
| 8 | Thomas Ziegler | SYS | final ranking | Final ranking | 42 | Volta ao Algarve |
| 9 | Alexander Efimkin | CBD | final ranking | Final ranking | 36 | Volta ao Algarve |
| 10 | Maarten Wijnants | (TTB) | final ranking | Final ranking | 30 | Volta ao Algarve |
| 11 | Hector Guerra Garcia | (TCF) | final ranking | Final ranking | 27 | Volta ao Algarve |
| 12 | Marco Velo | (RMC) | final ranking | Final ranking | 24 | Volta ao Algarve |
| 13 | Gregory Rast | SUP | final ranking | Final ranking | 21 | Volta ao Algarve |
| 14 | Luis Pinheiro | TL | final ranking | Final ranking | 18 | Volta ao Algarve |
| 15 | Pedro Cardoso | TL | final ranking | Final ranking | 16 | Volta ao Algarve |
| 16 | Peio Arreitunandia Quintero | DUK | final ranking | Final ranking | 14 | Volta ao Algarve |
| 17 | Jose Azevedo | OWC | final ranking | Final ranking | 12 | Volta ao Algarve |
| 18 | Wim van Huffel | (SUP) | final ranking | Final ranking | 10 | Volta ao Algarve |
| 19 | Andreas Kloden | CSI | final ranking | Final ranking | 9 | Volta ao Algarve |
| 20 | Yaroslav Popovych | (EUS) | final ranking | Final ranking | 8 | Volta ao Algarve |
| 1 | Gert Steegmans | SUP | stage 01 | Stage winner | 20 | Volta ao Algarve |
| 2 | Rene Haselbacher | AFR | stage 01 | Stage winner | 10 | Volta ao Algarve |
| 3 | Tomas Vaitkus | AFR | stage 01 | Stage winner | 5 | Volta ao Algarve |
| 1 | Bernhard Eisel | DTK | stage 02 | Stage winner | 20 | Volta ao Algarve |
| 2 | Jimmy Casper | TTB | stage 02 | Stage winner | 10 | Volta ao Algarve |
| 3 | Fabrizio Guidi | (CBD) | stage 02 | Stage winner | 5 | Volta ao Algarve |
| 1 | Alessandro Petacchi | ERW | stage 03 | Stage winner | 20 | Volta ao Algarve |
| 2 | Bernhard Eisel | DTK | stage 03 | Stage winner | 10 | Volta ao Algarve |
| 3 | Tomas Vaitkus | AFR | stage 03 | Stage winner | 5 | Volta ao Algarve |
| 1 | Alessandro Petacchi | ERW | stage 04 | Stage winner | 20 | Volta ao Algarve |
| 2 | Davide Rebellin | JOJ | stage 04 | Stage winner | 10 | Volta ao Algarve |
| 3 | Rene Haselbacher | AFR | stage 04 | Stage winner | 5 | Volta ao Algarve |
| 1 | Alessandro Petacchi | ERW | stage 05 | Stage winner | 20 | Volta ao Algarve |
| 2 | Fabrizio Guidi | (CBD) | stage 05 | Stage winner | 10 | Volta ao Algarve |
| 3 | Olaf Pollack | TTB | stage 05 | Stage winner | 5 | Volta ao Algarve |
| 1 | Gert Steegmans | SUP | stage 01 | Stage leader | 6 | Volta ao Algarve |
| 1 | Gert Steegmans | SUP | stage 02 | Stage leader | 6 | Volta ao Algarve |
| 1 | Bernhard Eisel | DTK | stage 03 | Stage leader | 6 | Volta ao Algarve |
| 1 | Alessandro Petacchi | ERW | stage 04 | Stage leader | 6 | Volta ao Algarve |