| Rk | Renner | Ploeg | Stage name | Ranking name | Points | Koers |
| 1 | POOR SEIEDI Samad | (AHE) | final ranking | Final ranking | 120 | Tour of Japan |
| 2 | BOLE Grega | DGB | final ranking | Final ranking | 90 | Tour of Japan |
| 3 | MIZBANI IRANAGH Ghader | AES | final ranking | Final ranking | 72 | Tour of Japan |
| 4 | TORIBIO ALCOLEA Jose Vicente | TL | final ranking | Final ranking | 66 | Tour of Japan |
| 5 | LEBAS Thomas | FPK | final ranking | Final ranking | 60 | Tour of Japan |
| 6 | CARTHY Hugh | AES | final ranking | Final ranking | 54 | Tour of Japan |
| 7 | KOLAHDOUZ Amir | FUL | final ranking | Final ranking | 48 | Tour of Japan |
| 8 | BAYLY Cameron | TL | final ranking | Final ranking | 42 | Tour of Japan |
| 9 | PRADES REVERTER Benjami | TL | final ranking | Final ranking | 36 | Tour of Japan |
| 10 | MASUDA Nariyuki | BCT | final ranking | Final ranking | 30 | Tour of Japan |
| 11 | BECKINSALE Jack | PAT | final ranking | Final ranking | 27 | Tour of Japan |
| 12 | CRAWFORD David Jai | BLB | final ranking | Final ranking | 24 | Tour of Japan |
| 13 | GARCIA AMBROA Ricardo | AND | final ranking | Final ranking | 21 | Tour of Japan |
| 14 | DOI Yukihiro | TL | final ranking | Final ranking | 18 | Tour of Japan |
| 15 | MOSES Thomas | (AHE) | final ranking | Final ranking | 16 | Tour of Japan |
| 16 | CONTI Valerio | (DFC) | final ranking | Final ranking | 14 | Tour of Japan |
| 17 | HANDLEY Richard | (ERW) | final ranking | Final ranking | 12 | Tour of Japan |
| 18 | SHEPPARD Eric | TL | final ranking | Final ranking | 10 | Tour of Japan |
| 19 | HAYAKAWA Tomohiro | TL | final ranking | Final ranking | 9 | Tour of Japan |
| 20 | YOSHIDA Hayato | TL | final ranking | Final ranking | 8 | Tour of Japan |
| 1 | CLARKE William | DUK | prologue | Stage winner | 20 | Tour of Japan |
| 2 | KERBY Jordan | PAT | prologue | Stage winner | 10 | Tour of Japan |
| 3 | POZZATO Filippo | TAS | prologue | Stage winner | 5 | Tour of Japan |
| 1 | WIPPERT Wouter | JEK | stage 1 | Stage winner | 20 | Tour of Japan |
| 2 | BONIFAZIO Niccolo | JEK | stage 1 | Stage winner | 10 | Tour of Japan |
| 3 | JONES Brenton | UJE | stage 1 | Stage winner | 5 | Tour of Japan |
| 1 | DE NEGRI Pierpaolo | TTB | stage 2 | Stage winner | 20 | Tour of Japan |
| 2 | LEBAS Thomas | FPK | stage 2 | Stage winner | 10 | Tour of Japan |
| 3 | BOLE Grega | DGB | stage 2 | Stage winner | 5 | Tour of Japan |
| 1 | POOR SEIEDI Samad | (AHE) | stage 3 | Stage winner | 20 | Tour of Japan |
| 2 | CARTHY Hugh | AES | stage 3 | Stage winner | 10 | Tour of Japan |
| 3 | MONIER Damien | TL | stage 3 | Stage winner | 5 | Tour of Japan |
| 1 | MIZBANI IRANAGH Ghader | AES | stage 4 | Stage winner | 20 | Tour of Japan |
| 2 | CARTHY Hugh | AES | stage 4 | Stage winner | 10 | Tour of Japan |
| 3 | POOR SEIEDI Samad | (AHE) | stage 4 | Stage winner | 5 | Tour of Japan |
| 1 | BONIFAZIO Niccolo | JEK | stage 5 | Stage winner | 20 | Tour of Japan |
| 2 | BOLE Grega | DGB | stage 5 | Stage winner | 10 | Tour of Japan |
| 3 | CLARKE William | DUK | stage 5 | Stage winner | 5 | Tour of Japan |
| 1 | CLARKE William | DUK | stage 1 | Stage leader | 6 | Tour of Japan |
| 1 | CLARKE William | DUK | stage 2 | Stage leader | 6 | Tour of Japan |
| 1 | DE NEGRI Pierpaolo | TTB | stage 3 | Stage leader | 6 | Tour of Japan |
| 1 | BOLE Grega | DGB | stage 4 | Stage leader | 6 | Tour of Japan |
| 1 | POOR SEIEDI Samad | (AHE) | stage 5 | Stage leader | 6 | Tour of Japan |