| Rk | Renner | Ploeg | Stage name | Ranking name | Points | Koers |
| 1 | GARCIA FERNANDEZ Marcos | RVL | final ranking | Final ranking | 120 | Tour of Japan |
| 2 | PERNSTEINER Hermann | MFR | final ranking | Final ranking | 90 | Tour of Japan |
| 3 | LEBAS Thomas | DCT | final ranking | Final ranking | 72 | Tour of Japan |
| 4 | HARPER Chris | (AVI) | final ranking | Final ranking | 66 | Tour of Japan |
| 5 | BOLE Grega | FUL | final ranking | Final ranking | 60 | Tour of Japan |
| 6 | CROME Sam | BCT | final ranking | Final ranking | 54 | Tour of Japan |
| 7 | PRADES REVERTER Benjami | DCT | final ranking | Final ranking | 48 | Tour of Japan |
| 8 | TORIBIO ALCOLEA Jose Vicente | WIN | final ranking | Final ranking | 42 | Tour of Japan |
| 9 | NAKANE Hideto | FUL | final ranking | Final ranking | 36 | Tour of Japan |
| 10 | PIPER Cameron | TL | final ranking | Final ranking | 30 | Tour of Japan |
| 11 | DIAZ Jose Manuel | VIP | final ranking | Final ranking | 27 | Tour of Japan |
| 12 | CASTIBLANCO CUBIDES Jorge Camilo | TL | final ranking | Final ranking | 24 | Tour of Japan |
| 13 | BARON CASTILLO Felix | WIN | final ranking | Final ranking | 21 | Tour of Japan |
| 14 | CANOLA Marco | CBD | final ranking | Final ranking | 18 | Tour of Japan |
| 15 | SUNDERLAND Dylan | AND | final ranking | Final ranking | 16 | Tour of Japan |
| 16 | LAVERACK Edward | TL | final ranking | Final ranking | 14 | Tour of Japan |
| 17 | GUARDIOLA TORA Salvador | WIN | final ranking | Final ranking | 12 | Tour of Japan |
| 18 | MINATO Ryo | TL | final ranking | Final ranking | 10 | Tour of Japan |
| 19 | DE MAAR Marc | TL | final ranking | Final ranking | 9 | Tour of Japan |
| 20 | KUBOKI Kazushige | TL | final ranking | Final ranking | 8 | Tour of Japan |
| 1 | BIBBY Ian | TL | prologue | Stage winner | 20 | Tour of Japan |
| 2 | CANOLA Marco | CBD | prologue | Stage winner | 10 | Tour of Japan |
| 3 | WOOD Oliver | CBD | prologue | Stage winner | 5 | Tour of Japan |
| 1 | AMEZAWA Takeaki | TL | stage 1 | Stage winner | 20 | Tour of Japan |
| 2 | BOLE Grega | FUL | stage 1 | Stage winner | 10 | Tour of Japan |
| 3 | CANOLA Marco | CBD | stage 1 | Stage winner | 5 | Tour of Japan |
| 1 | BOLE Grega | FUL | stage 2 | Stage winner | 20 | Tour of Japan |
| 2 | CANOLA Marco | CBD | stage 2 | Stage winner | 10 | Tour of Japan |
| 3 | BIBBY Ian | TL | stage 2 | Stage winner | 5 | Tour of Japan |
| 1 | RAIM Mihkel | FUL | stage 3 | Stage winner | 20 | Tour of Japan |
| 2 | KREDER Raymond | TTB | stage 3 | Stage winner | 10 | Tour of Japan |
| 3 | LAAS Martin | CRK | stage 3 | Stage winner | 5 | Tour of Japan |
| 1 | LEBAS Thomas | DCT | stage 4 | Stage winner | 20 | Tour of Japan |
| 2 | CASTIBLANCO CUBIDES Jorge Camilo | TL | stage 4 | Stage winner | 10 | Tour of Japan |
| 3 | SUNDERLAND Dylan | AND | stage 4 | Stage winner | 5 | Tour of Japan |
| 1 | GARCIA FERNANDEZ Marcos | RVL | stage 5 | Stage winner | 20 | Tour of Japan |
| 2 | PERNSTEINER Hermann | MFR | stage 5 | Stage winner | 10 | Tour of Japan |
| 3 | HARPER Chris | (AVI) | stage 5 | Stage winner | 5 | Tour of Japan |
| 1 | BOLE Grega | FUL | stage 6 | Stage winner | 20 | Tour of Japan |
| 2 | HARPER Chris | (AVI) | stage 6 | Stage winner | 10 | Tour of Japan |
| 3 | BARON CASTILLO Felix | WIN | stage 6 | Stage winner | 5 | Tour of Japan |
| 1 | LAAS Martin | CRK | stage 7 | Stage winner | 20 | Tour of Japan |
| 2 | GIACOPPO Anthony | TL | stage 7 | Stage winner | 10 | Tour of Japan |
| 3 | FERNANDEZ CASASOLA Airan | TL | stage 7 | Stage winner | 5 | Tour of Japan |
| 1 | BIBBY Ian | TL | stage 1 | Stage leader | 6 | Tour of Japan |
| 1 | BOLE Grega | FUL | stage 2 | Stage leader | 6 | Tour of Japan |
| 1 | BOLE Grega | FUL | stage 3 | Stage leader | 6 | Tour of Japan |
| 1 | BOLE Grega | FUL | stage 4 | Stage leader | 6 | Tour of Japan |
| 1 | LEBAS Thomas | DCT | stage 5 | Stage leader | 6 | Tour of Japan |
| 1 | GARCIA FERNANDEZ Marcos | RVL | stage 6 | Stage leader | 6 | Tour of Japan |
| 1 | GARCIA FERNANDEZ Marcos | RVL | stage 7 | Stage leader | 6 | Tour of Japan |