| Rk | Renner | Ploeg | Stage name | Ranking name | Points | Koers |
| 1 | ZEITS Andrey | TL | final ranking | Final ranking | 120 | Tour de Kyushu |
| 2 | NIBALI Antonio | TL | final ranking | Final ranking | 90 | Tour de Kyushu |
| 3 | EAVES William | (JEK) | final ranking | Final ranking | 72 | Tour de Kyushu |
| 4 | PRADES REVERTER Benjami | TL | final ranking | Final ranking | 66 | Tour de Kyushu |
| 5 | DYBALL Benjamin | (JOJ) | final ranking | Final ranking | 60 | Tour de Kyushu |
| 6 | QUINTERO ARTEAGA Leonel | TL | final ranking | Final ranking | 54 | Tour de Kyushu |
| 7 | CAVANAGH Ryan | TL | final ranking | Final ranking | 48 | Tour de Kyushu |
| 8 | ISHIGAMI Masahiro | TL | final ranking | Final ranking | 42 | Tour de Kyushu |
| 9 | SAINBAYAR Jambaljamts | TL | final ranking | Final ranking | 36 | Tour de Kyushu |
| 10 | ORAM James | TL | final ranking | Final ranking | 30 | Tour de Kyushu |
| 11 | TANI Junsei | TL | final ranking | Final ranking | 27 | Tour de Kyushu |
| 12 | MOREY Drew | AND | final ranking | Final ranking | 24 | Tour de Kyushu |
| 13 | KADOTA Yusuke | TL | final ranking | Final ranking | 21 | Tour de Kyushu |
| 14 | VERCOUILLIE Victor | (CHP) | final ranking | Final ranking | 18 | Tour de Kyushu |
| 15 | EARLE Nathan | (JOJ) | final ranking | Final ranking | 16 | Tour de Kyushu |
| 16 | SAWADA Toki | TL | final ranking | Final ranking | 14 | Tour de Kyushu |
| 17 | TORIBIO ALCOLEA Jose Vicente | TL | final ranking | Final ranking | 12 | Tour de Kyushu |
| 18 | HASHIKAWA Takeshi Jo | TL | final ranking | Final ranking | 10 | Tour de Kyushu |
| 19 | OKA Atsushi | TL | final ranking | Final ranking | 9 | Tour de Kyushu |
| 20 | GARDNER Daniel | TL | final ranking | Final ranking | 8 | Tour de Kyushu |
| 1 | KOJIMA Naoki | TL | stage 1 | Stage winner | 20 | Tour de Kyushu |
| 2 | SAINBAYAR Jambaljamts | TL | stage 1 | Stage winner | 10 | Tour de Kyushu |
| 3 | REGUIGUI Youcef | TL | stage 1 | Stage winner | 5 | Tour de Kyushu |
| 1 | ZEITS Andrey | TL | stage 2 | Stage winner | 20 | Tour de Kyushu |
| 2 | NIBALI Antonio | TL | stage 2 | Stage winner | 10 | Tour de Kyushu |
| 3 | TODOME Yuhi | TL | stage 2 | Stage winner | 5 | Tour de Kyushu |
| 1 | TREZISE Declan | TL | stage 3 | Stage winner | 20 | Tour de Kyushu |
| 2 | CAVANAGH Ryan | TL | stage 3 | Stage winner | 10 | Tour de Kyushu |
| 3 | DYBALL Benjamin | (JOJ) | stage 3 | Stage winner | 5 | Tour de Kyushu |
| 1 | KOJIMA Naoki | TL | stage 1 | Stage leader | 6 | Tour de Kyushu |
| 1 | ZEITS Andrey | TL | stage 2 | Stage leader | 6 | Tour de Kyushu |